hah! from a blue hater this means even more thanks!
concerning the order - this is an exception, not a rule for me. The thing is that this guitar is a bunch of first-s for me. To name just the relevant ones - its the first time I'm trying a set-neck and the first time I'm trying to do a faux-binding finish.
The way I wanted to do the binding was to spray the back and sides with shellac, finish sand the top (also removing any possible shellac overspray/runs) and then stain the top. I wasn't confident I could do all this with the neck already in place, so I decided to shuffle the order a little bit - do all of that (and everything else that I could) with the neck off the body, then after staining seal the top with a couple coats of shellac and do the remaining parts: glue the neck, route the (neck) pickup, align the bridge and drill the mounting holes..
So far its working ok - the neck pickup route is in place and the bridge is mounted. The only problem I got is that the shellac seemed to dissolve the colortone stain I used and washed a bit of the color off.. And I got little blue runs on the sides after painting the top, but these sanded out easily.
I'm now about to solder the electronics, test that everything works and then finish everything off - carve the heel, finish sand the neck etc. - and then its the real finishing, I'm planning to put rustins plastic coat over the whole guitar.